UMGCC FCSS
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    • BD FACSAria II
  • Historical
    • Cytek Aurora 3L
    • Cytek Aurora 4L
    • Cytek Aurora 5L
    • Cytek Aurora CS
    • BD FACSCanto II
    • BD LSR II
    • BD FACSAria II
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    • Miscellaneous
    • QC Bead Lots
    • Bleach Vs. QC Bead Lot 2006

Please see left-sidebar for definitions

3L

QC Status: Pass

4L

QC Status: Pass

5L

QC Status: Pass

CS

QC Status: Pass

  • 3L
  • 4L
  • 5L
  • CS
  • History
Detector
Gain
%RCV
Value Status Value Status
FSC 438 Pass 2.18 Pass
SSC 352 Pass 3.80 Pass
SSC-B 128 Pass 3.86 Pass
V1 371 Pass 1.37 Pass
V2 395 Pass 1.38 Pass
V3 494 Pass 1.43 Pass
V4 300 Pass 1.49 Pass
V5 389 Pass 1.48 Pass
V6 339 Pass 1.52 Pass
V7 458 Pass 1.62 Pass
V8 779 Pass 1.92 Pass
V9 623 Pass 1.94 Pass
V10 485 Pass 1.91 Pass
V11 400 Pass 1.79 Pass
V12 339 Pass 1.83 Pass
V13 347 Pass 1.81 Pass
V14 545 Pass 1.78 Pass
V15 623 Pass 1.67 Pass
V16 505 Pass 1.82 Pass
B1 602 Pass 2.03 Pass
B2 355 Pass 1.86 Pass
B3 377 Pass 1.84 Pass
B4 361 Pass 1.80 Pass
B5 297 Pass 1.85 Pass
B6 217 Pass 1.93 Pass
B7 402 Pass 1.85 Pass
B8 342 Pass 1.95 Pass
B9 454 Pass 2.01 Pass
B10 340 Pass 1.96 Pass
B11 265 Pass 2.07 Pass
B12 372 Pass 1.89 Pass
B13 444 Pass 2.10 Pass
B14 473 Pass 2.00 Pass
R1 249 Pass 1.77 Pass
R2 292 Pass 1.64 Pass
R3 369 Pass 1.69 Pass
R4 351 Pass 1.73 Pass
R5 356 Pass 2.01 Pass
R6 362 Pass 2.25 Pass
R7 778 Pass 2.66 Pass
R8 403 Pass 2.78 Pass
Detector
Gain
%RCV
Value Status Value Status
FSC 526 Pass 1.32 Pass
SSC 259 Pass 4.52 Pass
SSC-B 156 Pass 3.21 Pass
UV1 658 Pass 5.25 Pass
UV2 421 Pass 3.87 Pass
UV3 337 Pass 4.02 Pass
UV4 314 Pass 3.77 Pass
UV5 408 Pass 3.83 Pass
UV6 572 Pass 3.77 Pass
UV7 820 Pass 3.88 Pass
UV8 714 Pass 3.64 Pass
UV9 909 Pass 3.75 Pass
UV10 561 Pass 3.67 Pass
UV11 736 Pass 3.77 Pass
UV12 629 Pass 3.84 Pass
UV13 840 Pass 3.90 Pass
UV14 1683 Pass 4.00 Pass
UV15 1276 Pass 4.17 Pass
UV16 1836 Pass 4.29 Pass
V1 457 Pass 3.83 Pass
V2 554 Pass 3.69 Pass
V3 425 Pass 3.59 Pass
V4 315 Pass 3.35 Pass
V5 371 Pass 3.38 Pass
V6 320 Pass 3.37 Pass
V7 421 Pass 3.41 Pass
V8 650 Pass 3.42 Pass
V9 458 Pass 3.51 Pass
V10 522 Pass 3.43 Pass
V11 413 Pass 3.24 Pass
V12 358 Pass 3.18 Pass
V13 348 Pass 3.10 Pass
V14 441 Pass 3.18 Pass
V15 826 Pass 3.62 Pass
V16 465 Pass 3.54 Pass
B1 1128 Pass 2.22 Pass
B2 548 Pass 1.83 Pass
B3 523 Pass 1.65 Pass
B4 527 Pass 1.69 Pass
B5 507 Pass 1.58 Pass
B6 315 Pass 1.61 Pass
B7 609 Pass 1.55 Pass
B8 482 Pass 1.60 Pass
B9 735 Pass 1.74 Pass
B10 535 Pass 1.67 Pass
B11 315 Pass 1.84 Pass
B12 453 Pass 2.00 Pass
B13 779 Pass 2.02 Pass
B14 703 Pass 1.90 Pass
R1 175 Pass 2.23 Pass
R2 275 Pass 1.66 Pass
R3 375 Pass 1.31 Pass
R4 263 Pass 2.08 Pass
R5 217 Pass 1.94 Pass
R6 310 Pass 4.65 Pass
R7 609 Pass 1.43 Pass
R8 239 Pass 2.38 Pass
Detector
Gain
%RCV
Value Status Value Status
FSC 374 Pass 3.45 Pass
SSC 146 Pass 2.49 Pass
SSC-B 122 Pass 3.16 Pass
UV1 1263 Pass 2.21 Pass
UV2 349 Pass 0.88 Pass
UV3 275 Pass 1.32 Pass
UV4 204 Pass 1.41 Pass
UV5 255 Pass 1.55 Pass
UV6 313 Pass 1.64 Pass
UV7 489 Pass 1.73 Pass
UV8 393 Pass 1.68 Pass
UV9 468 Pass 1.64 Pass
UV10 315 Pass 1.47 Pass
UV11 394 Pass 1.15 Pass
UV12 361 Pass 1.13 Pass
UV13 521 Pass 1.23 Pass
UV14 884 Pass 1.39 Pass
UV15 706 Pass 1.49 Pass
UV16 922 Pass 1.78 Pass
V1 127 Pass 1.52 Pass
V2 237 Pass 1.56 Pass
V3 218 Pass 1.71 Pass
V4 146 Pass 1.84 Pass
V5 175 Pass 1.83 Pass
V6 179 Pass 1.89 Pass
V7 233 Pass 2.01 Pass
V8 293 Pass 2.10 Pass
V9 259 Pass 1.93 Pass
V10 294 Pass 1.87 Pass
V11 222 Pass 1.50 Pass
V12 179 Pass 1.35 Pass
V13 172 Pass 1.30 Pass
V14 237 Pass 1.34 Pass
V15 416 Pass 1.39 Pass
V16 290 Pass 1.32 Pass
B1 547 Pass 2.20 Pass
B2 335 Pass 2.22 Pass
B3 327 Pass 2.09 Pass
B4 298 Pass 1.86 Pass
B5 223 Pass 1.77 Pass
B6 213 Pass 1.67 Pass
B7 451 Pass 1.48 Pass
B8 315 Pass 1.52 Pass
B9 417 Pass 1.59 Pass
B10 380 Pass 1.53 Pass
B11 261 Pass 1.69 Pass
B12 254 Pass 1.62 Pass
B13 384 Pass 1.81 Pass
B14 441 Pass 1.80 Pass
YG1 400 Pass 1.36 Pass
YG2 384 Pass 1.32 Pass
YG3 246 Pass 1.39 Pass
YG4 466 Pass 1.36 Pass
YG5 375 Pass 1.43 Pass
YG6 444 Pass 1.42 Pass
YG7 298 Pass 1.42 Pass
YG8 272 Pass 1.45 Pass
YG9 357 Pass 1.53 Pass
YG10 349 Pass 1.61 Pass
R1 149 Pass 1.44 Pass
R2 149 Pass 1.29 Pass
R3 213 Pass 1.23 Pass
R4 207 Pass 1.12 Pass
R5 163 Pass 1.26 Pass
R6 151 Pass 1.14 Pass
R7 262 Pass 1.21 Pass
R8 165 Pass 1.23 Pass
Detector
Gain
%RCV
Value Status Value Status
FSC 491 Pass 2.21 Pass
SSC 274 Pass 6.20 Pass
SSC-B 444 Pass 4.58 Pass
UV1 1214 Pass 3.10 Pass
UV2 599 Pass 1.86 Pass
UV3 410 Pass 1.78 Pass
UV4 434 Pass 1.78 Pass
UV5 427 Pass 1.73 Pass
UV6 554 Pass 1.72 Pass
UV7 816 Pass 1.74 Pass
UV8 723 Pass 1.75 Pass
UV9 956 Pass 1.77 Pass
UV10 530 Pass 1.69 Pass
UV11 685 Pass 1.78 Pass
UV12 589 Pass 1.83 Pass
UV13 844 Pass 2.01 Pass
UV14 1357 Pass 2.32 Pass
UV15 1050 Pass 2.52 Pass
UV16 1537 Pass 3.15 Pass
V1 314 Pass 3.06 Pass
V2 415 Pass 3.00 Pass
V3 398 Pass 2.98 Pass
V4 262 Pass 2.83 Pass
V5 287 Pass 2.73 Pass
V6 279 Pass 2.70 Pass
V7 366 Pass 2.52 Pass
V8 489 Pass 2.27 Pass
V9 438 Pass 2.17 Pass
V10 444 Pass 2.16 Pass
V11 352 Pass 2.11 Pass
V12 332 Pass 2.08 Pass
V13 294 Pass 2.08 Pass
V14 353 Pass 2.20 Pass
V15 525 Pass 2.28 Pass
V16 437 Pass 2.51 Pass
B1 1618 Pass 2.75 Pass
B2 957 Pass 2.40 Pass
B3 854 Pass 2.05 Pass
B4 768 Pass 1.82 Pass
B5 680 Pass 1.61 Pass
B6 538 Pass 1.77 Pass
B7 1121 Pass 1.78 Pass
B8 791 Pass 2.04 Pass
B9 1132 Pass 2.52 Pass
B10 860 Pass 2.73 Pass
B11 530 Pass 2.82 Pass
B12 577 Pass 2.81 Pass
B13 673 Pass 2.94 Pass
B14 1017 Pass 2.82 Pass
YG1 726 Pass 3.44 Pass
YG2 728 Pass 3.17 Pass
YG3 471 Pass 3.17 Pass
YG4 953 Pass 3.15 Pass
YG5 727 Pass 2.90 Pass
YG6 940 Pass 2.63 Pass
YG7 630 Pass 2.47 Pass
YG8 626 Pass 2.74 Pass
YG9 697 Pass 2.68 Pass
YG10 762 Pass 2.95 Pass
R1 273 Pass 1.72 Pass
R2 275 Pass 1.75 Pass
R3 497 Pass 2.12 Pass
R4 413 Pass 2.13 Pass
R5 254 Pass 2.26 Pass
R6 284 Pass 2.57 Pass
R7 564 Pass 2.91 Pass
R8 292 Pass 3.66 Pass
#| '!! shinylive warning !!': |
#|   shinylive does not work in self-contained HTML documents.
#|   Please set `embed-resources: false` in your metadata.
#| standalone: true
#| viewerHeight: 450

webr::install("dplyr")
webr::install("gt")

library(shiny)
library(dplyr)
library(gt)

ui <- fluidPage(
  fluidRow(
    column(6,
           fluidRow(
             column(12, align = "center",
                    dateInput("date", label = "Select Date:", value = Sys.Date())
             )
           ),
           fluidRow(
             column(12, align = "center",
                    actionButton("btn_3L", label = "3L"),
                    actionButton("btn_4L", label = "4L"),
                    actionButton("btn_5L", label = "5L"),
                    actionButton("btn_CS", label = "CS")
             )
           ),
           fluidRow(
             column(12, align = "center",
                    actionButton("render", label = "Render Output")
             )
           ),
           # Output Section
           fluidRow(
             column(12,
                    tableOutput("qc_table")
             )
           )
    )
  )
)

server <- function(input, output, session) {
  
  data_path <-                                                
    paste(                                                  
      "https://raw.githubusercontent.com",                  
      "UMGCCFCSS", "InstrumentQC",                   
      "main", "data", "HistoricalData.csv",                              
      sep = "/"                                             
    ) 
  
  Data <- read.csv(data_path, check.names = FALSE)
  Data$Date <- as.Date(Data$Date) 
  
  function_path <-                                               
    paste(                                                  
      "https://raw.githubusercontent.com",                  
      "DavidRach", "Luciernaga",                   
      "master", "R", "DashboardHelpers.R",                              
      sep = "/"                                             
    )
  source(function_path)
  
  selected_instrument <- reactiveVal()
  
  observeEvent(input$btn_3L, { selected_instrument("3L") })
  observeEvent(input$btn_4L, { selected_instrument("4L") })
  observeEvent(input$btn_5L, { selected_instrument("5L") })
  observeEvent(input$btn_CS, { selected_instrument("CS") })

  table_data <- eventReactive(input$render, {
    req(input$date, selected_instrument())
    
    InstrumentSubset <- Data %>% filter(Instrument == selected_instrument())
    DateSubset <- InstrumentSubset %>% filter(Date == input$date)
    
    if (nrow(DateSubset) > 0) {
      TableData <- DateSubset %>% select(-Instrument, -Date)
      SmallTable(data = TableData)
    } else {
      NULL
    }
  })

  output$qc_table <- render_gt({
    req(table_data())
    table_data()
  })
}

app <- shinyApp(ui = ui, server = server)
Instruments
Date 3L 4L 5L CS
2026-03-19 Pass NA NA Pass
2026-03-18 Pass Pass Pass Pass
2026-03-17 Pass Pass Pass Pass
2026-03-16 Pass Pass Pass Pass
2026-03-13 Pass Pass Pass Pass
2026-03-12 Pass Pass Pass Pass
2026-03-11 Pass Pass Pass Pass
2026-03-10 Pass Pass Pass Pass
2026-03-09 Pass Pass Pass Pass
2026-03-06 Pass Pass Pass Pass
2026-03-05 Pass Pass Pass Pass
2026-03-04 Pass Pass Pass Pass
2026-03-03 Pass Pass Pass Pass
2026-03-02 Pass Pass Pass Pass
2026-02-27 Pass Pass Pass Pass
2026-02-26 Pass Pass Pass Pass
2026-02-25 Pass Pass Pass Pass
2026-02-24 Fail Pass Pass Pass
2026-02-20 Pass Caution Pass Pass
2026-02-19 Pass Caution Pass Pass
2026-02-18 Pass Pass Pass Pass
2026-02-17 Pass Pass Pass NA
2026-02-16 Pass Pass Pass Pass
2026-02-13 Pass Pass Pass Caution
2026-02-12 Pass Pass Pass Fail
2026-02-11 Pass Pass Pass Pass
2026-02-10 Pass Pass Pass Pass
2026-02-09 Pass Pass Pass Caution
2026-02-06 Pass Pass Pass Pass
2026-02-05 Pass Pass Pass Pass
2026-02-04 Pass Fail Pass Pass
2026-02-03 Pass Caution Pass Pass
2026-02-02 Pass Pass Pass Pass
2026-01-31 Pass NA NA NA
2026-01-30 Pass Caution Pass NA
2026-01-29 Pass Fail Pass Pass
2026-01-28 Pass Fail Pass Pass
2026-01-27 Pass NA Pass NA
2026-01-23 Pass Fail Pass Pass
2026-01-22 Pass Fail Pass Pass
2026-01-21 Pass Fail Pass Pass
2026-01-20 Pass Caution Pass Pass
2026-01-19 NA NA Fail NA
2026-01-16 Pass Caution Pass Pass
2026-01-15 Pass Caution Pass Caution
2026-01-14 Pass Caution Pass NA
2026-01-13 Pass Caution Pass NA
2026-01-12 Pass Pass Pass Pass
2026-01-09 Pass Caution Pass Pass
2026-01-08 Pass Caution Pass Caution
2026-01-07 Pass Caution Pass NA
2026-01-06 Pass NA NA NA
2026-01-05 Pass Caution Pass Pass
2026-01-02 NA NA NA Pass
2026-01-01 Pass Pass Pass NA
2025-12-28 NA NA Fail NA
2025-12-27 NA NA Pass NA
2025-12-26 NA NA Pass NA
2025-12-25 NA NA Pass NA
2025-12-24 NA NA Pass NA
2025-12-23 Pass Caution Pass Pass
2025-12-22 NA NA NA Pass
2025-12-19 Pass Pass Pass NA
2025-12-18 Pass Caution Pass Pass
2025-12-17 Pass Caution Pass Caution
2025-12-16 Pass Pass Pass NA
2025-12-15 Pass Caution Pass Pass
2025-12-12 Pass Caution Pass Pass
2025-12-11 Pass Caution Pass Pass
2025-12-10 Pass Caution Pass Pass
2025-12-09 Pass Caution Pass NA
2025-12-08 Pass Pass Pass Pass
2025-12-05 Pass Caution Pass Fail
2025-12-04 Pass Caution Fail Fail
2025-12-03 Pass Pass Caution NA
2025-12-02 Pass Caution Pass NA
2025-12-01 Pass Pass Pass Pass
2025-11-28 NA Caution NA NA
2025-11-26 Pass Caution Pass Caution
2025-11-25 Pass Pass Pass Caution
2025-11-24 Pass NA Pass Caution
2025-11-23 NA NA Pass NA
2025-11-21 Pass Pass Pass NA
2025-11-20 Pass Pass Pass Fail
2025-11-19 Pass Pass Pass Caution
2025-11-18 NA NA Pass NA

Dashboard data last updated on 2026-03-19

Definitions:

Pass: All gains within 100% baseline and all RCVs <6% for all detectors.

Caution: All gains within 100% baseline, but at least one detector had a RCV above the >6% cutoff. Instrument remains usable but resolution for fluorophores on the failed detector may decrease.

Fail: Either a gain exceeded 100% baseline, or RCVs exceeded >6% for at least one indicator detector. Significant variation and batch effects may occcur.

For additional information, navigate to the Help page.

About

This dashboard contains the visualized QC data for the Cytek and BD cytometers at the UMGCC FCSS

For additional flow cytometry resources, visit our website

This dashboard was created with Quarto and is maintained by David Rach

University of Maryland, Baltimore

 

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